Accession ID: MIRT005559 [miRNA, hsa-miR-101-5p :: ATM, target gene]
pre-miRNA Information
pre-miRNA ID hsa-mir-101-1LinkOut: [miRBase ]
Description Homo sapiens miR-101-1 stem-loop
Comment Reference .
2nd Structure of pre-miRNA
Disease
Mature miRNA Information
Mature miRNA hsa-miR-101-5p
Mature Sequence 11| CAGUUAUCACAGUGCUGAUGCU |32
Evidence Experimental
Experiments Cloned
Putative hsa-miR-101-5p Targets LinkOut: [ TargetScanS 5.1 | MicroCosm | microRNA.org | miRecords | miRDB | miRo | miRNAMap 2.0 ]
Gene Information
Gene Symbol ATM LinkOut: [ Entrez Gene | BioGPS | Wikipedia | iHop ]
Synonyms AT1, ATA, ATC, ATD, ATDC, ATE, TEL1, TELO1
Description ataxia telangiectasia mutated
Transcript NM_000051    LinkOut: [ RefSeq ]
Expression LinkOut: [ BioGPS ]
Putative miRNA Targets on ATM LinkOut: [ TargetScan 5.1 | MicroCosm | miRNAMap 2.0 ]
3'UTR of ATM
(miRNA target sites are highlighted)
>ATM|NM_000051|3'UTR
   1 TCTTCAGTATATGAATTACCCTTTCATTCAGCCTTTAGAAATTATATTTTAGCCTTTATTTTTAACCTGCCAACATACTT
  81 TAAGTAGGGATTAATATTTAAGTGAACTATTGTGGGTTTTTTTGAATGTTGGTTTTAATACTTGATTTAATCACCACTCA
 161 AAAATGTTTTGATGGTCTTAAGGAACATCTCTGCTTTCACTCTTTAGAAATAATGGTCATTCGGGCTGGGCGCAGCGGCT
 241 CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGAGCGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAAGA
 321 GACCAGCCTGGCCAGTATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGAGCATGGTGGCGGGCACCTGTA
 401 ATCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGTGAAGGTTGCTGTGGGCCAAAATCATGCC
 481 ATTGCACTCCAGCCTGGGTGACAAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAAAAACAGAAACGTATTTGGATTTT
 561 TCCTAGTAAGATCACTCAGTGTTACTAAATAATGAAGTTGTTATGGAGAACAAATTTCAAAGACACAGTTAGTGTAGTTA
 641 CTATTTTTTTAAGTGTGTATTAAAACTTCTCATTCTATTCTCTTTATCTTTTAAGCCCTTCTGTACTGTCCATGTATGTT
 721 ATCTTTCTGTGATAACTTCATAGATTGCCTTCTAGTTCATGAATTCTCTTGTCAGATGTATATAATCTCTTTTACCCTAT
 801 CCATTGGGCTTCTTCTTTCAGAAATTGTTTTTCATTTCTAATTATGCATCATTTTTCAGATCTCTGTTTCTTGATGTCAT
 881 TTTTAATGTTTTTTTAATGTTTTTTATGTCACTAATTATTTTAAATGTCTGTACTTGATAGACACTGTAATAGTTCTATT
 961 AAATTTAGTTCCTGCTGTTTATATCTGTTGATTTTTGTATTTGATAGGCTGTTCATCCAGTTTTGTCTTTTTGAAAAGTG
1041 AGTTTATTTTCAGCAAGGCTTTATCTATGGGAATCTTGAGTGTCTGTTTATGTCATATTCCCAGGGCTGTTGCTGCACAC
1121 AAGCCCATTCTTATTTTAATTTCTTGGCTTTAGGGTTTCCATACCTGAAGTGTAGCATAAATACTGATAGGAGATTTCCC
1201 AGGCCAAGGCAAACACACTTCCTCCTCATCTCCTTGTGCTAGTGGGCAGAATATTTGATTGATGCCTTTTTCACTGAGAG
1281 TATAAGCTTCCATGTGTCCCACCTTTATGGCAGGGGTGGAAGGAGGTACATTTAATTCCCACTGCCTGCCTTTGGCAAGC
1361 CCTGGGTTCTTTGCTCCCCATATAGATGTCTAAGCTAAAAGCCGTGGGTTAATGAGACTGGCAAATTGTTCCAGGACAGC
1441 TACAGCATCAGCTCACATATTCACCTCTCTGGTTTTTCATTCCCCTCATTTTTTTCTGAGACAGAGTCTTGCTCTGTCAC
1521 CCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGAAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCC
1601 TCCCGAGTAGCTGGGACTACAGGCGTGTGCCAACACGCCCGGCTAATTTTTTGTATTTTTATTAGAGACGGAGTTTCACC
1681 GTGTTAGCCAGGATGGTCTCGATCGCTTGACCTCGTGATCCACCCTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGT
1761 GAGCCACCGCGCCCGGCCTCATTCCCCTCATTTTTGACCGTAAGGATTTCCCCTTTCTTGTAAGTTCTGCTATGTATTTA
1841 AAAGAATGTTTTCTACATTTTATCCAGCATTTCTCTGTGTTCTGTTGGAAGGGAAGGGCTTAGGTATCTAGTTTGATACA
1921 TAGGTAGAAGTGGAACATTTCTCTGTCCCCCAGCTGTCATCATATAAGATAAACATCAGATAAAAAGCCACCTGAAAGTA
2001 AAACTACTGACTCGTGTATTAGTGAGTATAATCTCTTCTCCATCCTTAGGAAAATGTTCATCCCAGCTGCGGAGATTAAC
2081 AAATGGGTGATTGAGCTTTCTCCTCGTATTTGGACCTTGAAGGTTATATAAATTTTTTTCTTATGAAGAGTTGGCATTTC
2161 TTTTTATTGCCAATGGCAGGCACTCATTCATATTTGATCTCCTCACCTTCCCCTCCCCTAAAACCAATCTCCAGAACTTT
2241 TTGGACTATAAATTTCTTGGTTTGACTTCTGGAGAACTGTTCAGAATATTACTTTGCATTTCAAATTACAAACTTACCTT
2321 GGTGTATCTTTTTCTTACAAGCTGCCTAAATGAATATTTGGTATATATTGGTAGTTTTATTACTATAGTAAATCAAGGAA
2401 ATGCAGTAAACTTAAAATGTCTTTAAGAAAGCCCTGAAATCTTCATGGGTGAAATTAGAAATTATCAACTAGATAATAGT
2481 ATAGATAAATGAATTTGTAGCTAATTCTTGCTAGTTGTTGCATCCAGAGAGCTTTGAATAACATCATTAATCTACTCTTT
2561 AGCCTTGCATGGTATGCTATGAGGCTCCTGTTCTGTTCAAGTATTCTAATCAATGGCTTTGAAAAGTTTATCAAATTTAC
2641 ATACAGATCACAAGCCTAGGAGAAATAACTAATTCACAGATGACAGAATTAAGATTATAAAAGATTTTTTTTTTGTAATT
2721 TTAGTAGAGACAGGGTTGCCATTGTATTCCAGCCTTGGCGACAGAGCAAGACTCTGCCTCAAAAAAAAAAAAAAAAAGGT
2801 TTTGGCAAGCTGGAACTCTTTCTGCAAATGACTAAGATAGAAAACTGCCAAGGACAAATGAGGAGTAGTTAGATTTTGAA
2881 AATATTAATCATAGAATAGTTGTTGTATGCTAAGTCACTGACCCATATTATGTACAGCATTTCTGATCTTTACTTTGCAA
2961 GATTAGTGATACTATCCCAATACACTGCTGGAGAAATCAGAATTTGGAGAAATAAGTTGTCCAAGGCAAGAAGATAGTAA
3041 ATTATAAGTACAAGTGTAATATGGACAGTATCTAACTTGAAAAGATTTCAGGCGAAAAGAATCTGGGGTTTGCCAGTCAG
3121 TTGCTCAAAAGGTCAATGAAAACCAAATAGTGAAGCTATCAGAGAAGCTAATAAATTATAGACTGCTTGAACAGTTGTGT
3201 CCAGATTAAGGGAGATAATAGCTTTCCCACCCTACTTTGTGCAGGTCATACCTCCCCAAAGTGTTTACCTAATCAGTAGG
3281 TTCACAAACTCTTGGTCATTATAGTATATGCCTAAAATGTATGCACTTAGGAATGCTAAAAATTTAAATATGGTCTAAAG
3361 CAAATAAAAGCAAAGAGGAAAAACTTTGGACAGCGTAAAGACTAGAATAGTCTTTTAAAAAGAAAGCCAGTATATTGGTT
3441 TGAAATATAGAGATGTGTCCCAATTTCAAGTATTTTAATTGCACCTTAATGAAATTATCTATTTTCTATAGATTTTAGTA
3521 CTATTGAATGTATTACTTTACTGTTACCTGAATTTATTATAAAGTGTTTTTGAATAAATAATTCTAAAAGC
Target sites Provided by authors  Predicted by miRanda
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1
miRNA  3' ucGUAGUCGUGACACUAUUGAc 5'
            :|||  : ||||||||||| 
Target 5' gtTATC-TTTCTGTGATAACTt 3'
718 - 738 163.00 -16.00
2
miRNA  3' ucGUAGUCGUGACACUAUUGac 5'
            :||||  |||  |||||:  
Target 5' atTATCA--ACT-AGATAATag 3'
2461 - 2479 119.00 -5.70
3
miRNA  3' ucGUAGUCGUGACACUAU---UGAc 5'
            ::|| |:||| |||||   ||| 
Target 5' aaTGTCTGTACT-TGATAGACACTg 3'
924 - 947 119.00 -13.40
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target hsa-miR-101-5p :: ATM    [ Functional MTI ]
Validation Method Luciferase reporter assay , qRT-PCR , Other
Conditions 293T , 95C , 95D , U87MGD , U87MG , M059K
Location of target site 3'UTR
Tools used in this research MicroCosm , miRanda , miRBase Target Database
Original Description (Extracted from the article) ... We identified that miR- 101 could efficiently target DNA-PKcs and ATM via binding to the 3'- UTR of DNA-PKcs or ATM mRNA.//To verify whether DNA-PKcs or ATM is a target of miR-101, we made a lentiviral construct that contained a precursor of miR-101 (Figure S1)//These results indicate for the first time that, besides mTOR, DNA-PK and ATM are also targets of miR-101.// ...

- Yan, D. Ng, W. L. Zhang, X. Wang, P. Zhang, et al., 2010, PLoS One.

Article - Yan, D. Ng, W. L. Zhang, X. Wang, P. Zhang, et al.
- PLoS One, 2010
BACKGROUND: Radiotherapy kills tumor-cells by inducing DNA double strand breaks (DSBs). However, the efficient repair of tumors frequently prevents successful treatment. Therefore, identifying new practical sensitizers is an essential step towards successful radiotherapy. In this study, we tested the new hypothesis: identifying the miRNAs to target DNA DSB repair genes could be a new way for sensitizing tumors to ionizing radiation. PRINCIPAL FINDINGS: HERE, WE CHOSE TWO GENES: DNA-PKcs (an essential factor for non-homologous end-joining repair) and ATM (an important checkpoint regulator for promoting homologous recombination repair) as the targets to search their regulating miRNAs. By combining the database search and the bench work, we picked out miR-101. We identified that miR-101 could efficiently target DNA-PKcs and ATM via binding to the 3'- UTR of DNA-PKcs or ATM mRNA. Up-regulating miR-101 efficiently reduced the protein levels of DNA-PKcs and ATM in these tumor cells and most importantly, sensitized the tumor cells to radiation in vitro and in vivo. CONCLUSIONS: These data demonstrate for the first time that miRNAs could be used to target DNA repair genes and thus sensitize tumors to radiation. These results provide a new way for improving tumor radiotherapy.
LinkOut: [PMID: 20617180]
MiRNA-Target Expression Profile:

 
MiRNA-Target Expression Profile(TCGA):

 
MiRNA-Target Interaction Network:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR)
Other evidence
55 hsa-miR-101-5p Target Genes:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005558 PRKDC protein kinase, DNA-activated, catalytic polypeptide 2 1
MIRT005559 ATM ataxia telangiectasia mutated 3 1
MIRT038714 TMSB10 thymosin beta 10 1 1
MIRT064840 ZBTB18 zinc finger protein 238 1 1
MIRT066165 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 1 1
MIRT089580 MAT2A methionine adenosyltransferase II, alpha 1 2
MIRT095008 AFF4 AF4/FMR2 family, member 4 1 1
MIRT266193 TXNIP thioredoxin interacting protein 1 1
MIRT280282 CMPK1 cytidine monophosphate (UMP-CMP) kinase 1, cytosolic 1 1
MIRT329427 C5ORF51 chromosome 5 open reading frame 51 1 1
MIRT331963 TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 1 1
MIRT333607 EFHD2 EF-hand domain family, member D2 1 1
MIRT355843 AIMP1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 1 1
MIRT447684 MTPAP mitochondrial poly(A) polymerase 1 1
MIRT451781 USP36 ubiquitin specific peptidase 36 1 1
MIRT452204 TMEM68 transmembrane protein 68 1 2
MIRT465575 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT466445 TFAM transcription factor A, mitochondrial 1 4
MIRT466769 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 1 4
MIRT470377 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 1 1
MIRT471684 PABPN1 poly(A) binding protein, nuclear 1 1 1
MIRT480906 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 1 1
MIRT491030 FDX1 ferredoxin 1 1 2
MIRT506124 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 1 4
MIRT506610 MARCH6 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 1 4
MIRT520592 TMEM55B transmembrane protein 55B 1 3
MIRT531128 CLPB ClpB caseinolytic peptidase B homolog (E. coli) 1 1
MIRT532220 CCDC117 coiled-coil domain containing 117 1 1
MIRT532787 RBM22 RNA binding motif protein 22 1 1
MIRT535709 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 1 1
MIRT539026 ATXN7L1 ataxin 7-like 1 1 2
MIRT540298 TMA16 translation machinery associated 16 homolog (S. cerevisiae) 1 1
MIRT547194 PAWR PRKC, apoptosis, WT1, regulator 1 1
MIRT548935 CDK17 cyclin-dependent kinase 17 1 1
MIRT550033 WWTR1 WW domain containing transcription regulator 1 1 1
MIRT552244 DUSP3 dual specificity phosphatase 3 1 1
MIRT553557 TMEM161B transmembrane protein 161B 1 1
MIRT555067 PXK PX domain containing serine/threonine kinase 1 1
MIRT555493 PNRC2 proline-rich nuclear receptor coactivator 2 1 1
MIRT555824 PAX9 paired box 9 1 1
MIRT556614 LCOR ligand dependent nuclear receptor corepressor 1 1
MIRT559225 BLMH bleomycin hydrolase 1 1
MIRT560200 GXYLT2 glucoside xylosyltransferase 2 1 1
MIRT568262 BMP2K BMP2 inducible kinase 1 1
MIRT573847 PPA1 pyrophosphatase (inorganic) 1 1 1
MIRT609581 GJD2 gap junction protein, delta 2, 36kDa 1 1
MIRT609940 MYCBP c-myc binding protein 1 1
MIRT627026 CREBL2 cAMP responsive element binding protein-like 2 1 1
MIRT679122 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 1 1
MIRT685557 TXK TXK tyrosine kinase 1 1
MIRT686204 ZNF451 zinc finger protein 451 1 1
MIRT694309 COPB2 coatomer protein complex, subunit beta 2 (beta prime) 1 1
MIRT698793 STK38 serine/threonine kinase 38 1 1
MIRT702499 KIAA0040 KIAA0040 1 1
MIRT716978 GTDC1 glycosyltransferase-like domain containing 1 1 1
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